A function for formatting Taxmap objects in the MicrobiomeR format. This function attempts to give more customization than the as_*_format functions.

as_custom_format(obj, format, change_name_list = NULL, ...)



An object to be converted to a Taxmap object with create_taxmap.


The name of the format to convert the object to.


A list with names of the tables in the observation data, that have matching values that are used to change the names of the table. Default: NULL


An optional list of parameters to use in the as_*_format function specified


A Taxmap object that we have tried to format with all of our heart.


This function is meant to be more helpful for customizing the Taxmap object.

See also